To analyze data, go here and click on "Epigenomic Analysis Pipeline Modules" item under Tools in the top left corner of the page.

The Level 0 data (principally reads) are processed using reference analysis pipelines. The first step in sequence data analysis is the mapping of large volumes of reads (mappings = Level 1 data) followed by processing appropriate to the assay type such as producing read mapping densities for ChIP-seq experiments or methylation calls for bisulfite-seq experiments (Level 2 data). For more details consult the current EDACC Recommendations document"