RFAMH.F.-FLJ/H-InV
RNA classes Total Number Methods* Number
snRNA 83 H.F. 72
RFAM 80
Y RNA 46 H.F. 35
45
SnoRNA (C/D box) 21 H.F. 6
RFAM 4
snoScan 17
SnoRNA (HA/CA box) 22 H.F. 12
Fisher 8
C.M 8
tRNA 13 H.F. 10
tRNA ­Scan 9
SRP RNA 17 H.F. 1
SRP RNA Scan 16
miRNA 3 H.F. 1
RFAM 3
mRNA­like ncRNA 481 H.F.-FANTOM 1
452
Unigene Filter 28
rRNA 10 H.F. 3
RFAM 7
telomerase RNA 1 H.F. 3
7SK RNA 3 H.F. 3
snmRNA 2 H.F. 2
scaRNA 1 H.F. 1
Total 713 872 (Redundant)
Supplementary Table 2. Predicted ncRNA candidates on human chromosome 3.
*H.F: Homologues finding with BLAST or sim4 algorithms
U.S.: Human Unigene Screening method